3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12408

Details:

PFam ID : PF12408

PFam Domain Description : Ribose-5-phosphate isomerase

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 79

Average sequence length: 47.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12408	A0MM14_BRABE_297_368	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12408	F2NB17_9ACTN_165_210	97.4

Sequence based PCA Plot of the family - PF12408 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay