3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08080

Details:

PFam ID : PF08080

PFam Domain Description : RNPHF zinc finger

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 12

Average sequence length: 28

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08080	A3F4R1_TAEAS_132_203	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08080	Q6NW53_DANRE_128_150	90.9

Sequence based PCA Plot of the family - PF08080 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay