3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02341

Details:

PFam ID : PF02341

PFam Domain Description : RbcX protein

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 87

Average sequence length: 105.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02341	A8ITH2_CHLRE_1_60	21.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02341	E1Z3U1_9CHLO_13_129	100

Sequence based PCA Plot of the family - PF02341 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=11
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay