3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04059

Details:

PFam ID : PF04059

PFam Domain Description : RNA recognition motif 2

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 181

Average sequence length: 90.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04059	B9IGR1_POPTR_1_61	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04059	D7TRG3_VITVI_3_75	100

Sequence based PCA Plot of the family - PF04059 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=70 Length=8
Motif3 Start=16 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay