3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00237

Details:

PFam ID : PF00237

PFam Domain Description : Ribosomal protein L22p/L17e

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 1335

Average sequence length: 108.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00237	RL22_ELUMP_5_113	83.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00237	B5A4M0_GYMST_9_144	100

Sequence based PCA Plot of the family - PF00237 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=7 Length=8
Motif3 Start=129 Length=8
Motif4 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay