3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00615

Details:

PFam ID : PF00615

PFam Domain Description : Regulator of G protein signaling domain

Number of Sequence in 50% Dataset : 520

Number of Sequence in Full Dataset : 1222

Average sequence length: 124.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00615	Q29NL7_DROPS_92_283	82.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00615	D0NAZ7_PHYIT_4_129	99.9

Sequence based PCA Plot of the family - PF00615 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=86 Length=8
Motif2 Start=73 Length=8
Motif3 Start=1 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay