3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13234

Details:

PFam ID : PF13234

PFam Domain Description : rRNA-processing arch domain

Number of Sequence in 50% Dataset : 120

Number of Sequence in Full Dataset : 280

Average sequence length: 221.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13234	A8PVG7_MALGO_750_947	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13234	E1ZSU9_9CHLO_523_849	100

Sequence based PCA Plot of the family - PF13234 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=284 Length=8
Motif3 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay