3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03984

Details:

PFam ID : PF03984

PFam Domain Description : Repeat of unknown function (DUF346)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 21

Average sequence length: 38.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03984	A8M381_SALAI_424_465	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03984	A8M381_SALAI_424_465	100

Sequence based PCA Plot of the family - PF03984 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=31

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay