3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06959

Details:

PFam ID : PF06959

PFam Domain Description : RecQ helicase protein-like 5 (RecQ5)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 10

Average sequence length: 173.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06959	B4F6V5_XENTR_685_795	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06959	F1NWK5_CHICK_638_839	100

Sequence based PCA Plot of the family - PF06959 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=182 Length=8
Motif2 Start=9 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay