3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01649

Details:

PFam ID : PF01649

PFam Domain Description : Ribosomal protein S20

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 1013

Average sequence length: 82.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01649	D0GLI0_9FUSO_2_38	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01649	Q075M5_PROWI_51_142	100

Sequence based PCA Plot of the family - PF01649 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=18 Length=8
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay