3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08081

Details:

PFam ID : PF08081

PFam Domain Description : RBM1CTR (NUC064) family

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 19

Average sequence length: 43

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08081	A3F4R1_TAEAS_132_203	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08081	D3JUI7_BOVIN_157_200	94.4

Sequence based PCA Plot of the family - PF08081 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay