3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04785

Details:

PFam ID : PF04785

PFam Domain Description : Rhabdovirus matrix protein M2

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 9

Average sequence length: 179.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04785	A6FIP4_9GAMM_1_50	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04785	Q86595_MOKV_1_202	100

Sequence based PCA Plot of the family - PF04785 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=105 Length=8
Motif4 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay