3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01015

Details:

PFam ID : PF01015

PFam Domain Description : Ribosomal S3Ae family

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 267

Average sequence length: 189.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01015	A4D1I1_HUMAN_12_95	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01015	D2V3J3_NAEGR_10_225	100

Sequence based PCA Plot of the family - PF01015 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay