3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02134

Details:

PFam ID : PF02134

PFam Domain Description : Repeat in ubiquitin-activating (UBA) protein

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 549

Average sequence length: 65.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02134	C4Q4E6_SCHMA_1_45	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02134	D2V1X8_NAEGR_583_655	100

Sequence based PCA Plot of the family - PF02134 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=17
Motif2 Start=2 Length=11
Motif3 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay