3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00445

Details:

PFam ID : PF00445

PFam Domain Description : Ribonuclease T2 family

Number of Sequence in 50% Dataset : 189

Number of Sequence in Full Dataset : 1165

Average sequence length: 154.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00445	E9GQA3_DAPPU_2_50	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00445	Q9ZSG3_9SOLA_1_66	100

Sequence based PCA Plot of the family - PF00445 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=172 Length=8
Motif2 Start=90 Length=11
Motif3 Start=2 Length=14
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay