3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12234

Details:

PFam ID : PF12234

PFam Domain Description : RAVE protein 1 C terminal

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 164

Average sequence length: 423.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12234	A7AVG5_BABBO_893_1073	83.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12234	E3KP75_PUCGT_877_1296	100

Sequence based PCA Plot of the family - PF12234 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=54 Length=8
Motif2 Start=324 Length=8
Motif3 Start=308 Length=8
Motif4 Start=200 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay