3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02502

Details:

PFam ID : PF02502

PFam Domain Description : Ribose/Galactose Isomerase

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 1154

Average sequence length: 140.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02502	D9PN67_9ZZZZ_50_92	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02502	F0HUJ3_LACDL_2_100	100

Sequence based PCA Plot of the family - PF02502 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=69 Length=11
Motif3 Start=32 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay