3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01245

Details:

PFam ID : PF01245

PFam Domain Description : Ribosomal protein L19

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 974

Average sequence length: 112.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01245	D4PBM5_HARVE_2_101	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01245	E3KD04_PUCGT_98_228	100

Sequence based PCA Plot of the family - PF01245 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=63 Length=8
Motif2 Start=26 Length=8
Motif3 Start=4 Length=8
Motif4 Start=84 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay