3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04506

Details:

PFam ID : PF04506

PFam Domain Description : Rft protein

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 196

Average sequence length: 370.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04506	A4RVR3_OSTLU_191_302	63.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04506	F0WDI9_9STRA_24_581	100

Sequence based PCA Plot of the family - PF04506 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=1 Length=8
Motif3 Start=17 Length=8
Motif4 Start=222 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay