3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01198

Details:

PFam ID : PF01198

PFam Domain Description : Ribosomal protein L31e

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 266

Average sequence length: 79.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01198	B3V6H2_9ARCH_1_30	29.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01198	Q00ZX3_OSTTA_1_37	100

Sequence based PCA Plot of the family - PF01198 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay