3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04957

Details:

PFam ID : PF04957

PFam Domain Description : Ribosome modulation factor

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 77

Average sequence length: 52.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04957	B4X3W2_9GAMM_3_54	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04957	B4X3W2_9GAMM_3_54	98.6

Sequence based PCA Plot of the family - PF04957 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=8
Motif2 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay