3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08339

Details:

PFam ID : PF08339

PFam Domain Description : RTX C-terminal domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 32

Average sequence length: 118.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08339	C9R5U4_AGGAD_868_1055	43.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08339	E0EFD7_ACTPL_885_1050	100

Sequence based PCA Plot of the family - PF08339 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=16 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay