3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06047

Details:

PFam ID : PF06047

PFam Domain Description : Ras-induced vulval development antagonist

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 60

Average sequence length: 100.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06047	A8XEH0_CAEBR_414_495	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06047	A0C007_PARTE_194_290	100

Sequence based PCA Plot of the family - PF06047 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=57 Length=8
Motif2 Start=12 Length=8
Motif3 Start=48 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay