3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13375

Details:

PFam ID : PF13375

PFam Domain Description : RnfC Barrel sandwich hybrid domain

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 535

Average sequence length: 93.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13375	Q7RXE6_NEUCR_211_322	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13375	D4LGN6_9FIRM_4_65	100

Sequence based PCA Plot of the family - PF13375 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=34 Length=8
Motif3 Start=17 Length=8
Motif4 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay