3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08586

Details:

PFam ID : PF08586

PFam Domain Description : RSC complex, Rsc14/Ldb7 subunit

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 8

Average sequence length: 88.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08586	E9GKY6_DAPPU_6_94	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08586	Q750N8_ASHGO_5_107	100

Sequence based PCA Plot of the family - PF08586 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay