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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07834
Details:

PFam ID : PF07834

PFam Domain Description : RanGAP1 C-terminal domain

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 25

Average sequence length: 152.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF07834D6WGI9_TRICA_359_53318.1
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF07834E9G1R0_DAPPU_397_589100
Sequence based PCA Plot of the family - PF07834 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay