3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06405

Details:

PFam ID : PF06405

PFam Domain Description : Red chlorophyll catabolite reductase (RCC reductase)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 36

Average sequence length: 206.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06405	A2Z6T7_ORYSI_300_399	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06405	D5A8K2_PICSI_19_272	100

Sequence based PCA Plot of the family - PF06405 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay