3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00318

Details:

PFam ID : PF00318

PFam Domain Description : Ribosomal protein S2

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 1509

Average sequence length: 171.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00318	D8PWL1_SCHCM_84_194	62.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00318	Q56GW4_HYDEC_18_87	99.7

Sequence based PCA Plot of the family - PF00318 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=36 Length=8
Motif3 Start=19 Length=8
Motif4 Start=97 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay