3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00203

Details:

PFam ID : PF00203

PFam Domain Description : Ribosomal protein S19

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 1016

Average sequence length: 78.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00203	B5YMK2_THAPS_180_266	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00203	Q9XMU5_TETPY_3_85	99.5

Sequence based PCA Plot of the family - PF00203 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=18 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay