3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12595

Details:

PFam ID : PF12595

PFam Domain Description : Rhomboid serine protease

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 20

Average sequence length: 180

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12595	A4H6H2_LEIBR_1_165	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12595	F2Z3W3_MOUSE_91_155	100

Sequence based PCA Plot of the family - PF12595 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay