3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09510

Details:

PFam ID : PF09510

PFam Domain Description : Rtt102p-like transcription regulator protein

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 13

Average sequence length: 116.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09510	A5DU42_LODEL_20_142	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09510	E7R7N0_PICAD_11_155	100

Sequence based PCA Plot of the family - PF09510 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=1 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay