3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01000

Details:

PFam ID : PF01000

PFam Domain Description : RNA polymerase Rpb3/RpoA insert domain

Number of Sequence in 50% Dataset : 125

Number of Sequence in Full Dataset : 1507

Average sequence length: 120.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01000	C8TDY9_EIMTE_85_136	56.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01000	RPOA_MYCMO_57_274	84

Sequence based PCA Plot of the family - PF01000 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay