3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12426

Details:

PFam ID : PF12426

PFam Domain Description : RNA dependent RNA polymerase

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 24

Average sequence length: 39.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12426	F1ML69_BOVIN_390_454	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12426	Q76TC7_9VIRU_1_37	100

Sequence based PCA Plot of the family - PF12426 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay