3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01525

Details:

PFam ID : PF01525

PFam Domain Description : Rotavirus NS26

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 19

Average sequence length: 171.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01525	D3JW92_9GEMI_1_19	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01525	NSP5_ROTBS_1_209	100

Sequence based PCA Plot of the family - PF01525 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay