3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05189

Details:

PFam ID : PF05189

PFam Domain Description : RNA 3'-terminal phosphate cyclase (RTC), insert domain

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 337

Average sequence length: 102.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05189	F1S564_PIG_215_290	27.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05189	Q16EE6_AEDAE_183_244	95.8

Sequence based PCA Plot of the family - PF05189 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=59 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay