3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06817

Details:

PFam ID : PF06817

PFam Domain Description : Reverse transcriptase thumb domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 1020

Average sequence length: 64.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06817	Q98YJ2_9HIV1_320_338	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06817	Q9DKV8_CAEV_383_453	98.0

Sequence based PCA Plot of the family - PF06817 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=50 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay