3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01424

Details:

PFam ID : PF01424

PFam Domain Description : R3H domain

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 886

Average sequence length: 55.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01424	Q7QBU2_ANOGA_346_407	5.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01424	E9C6I9_9EUKA_906_959	99.7

Sequence based PCA Plot of the family - PF01424 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay