3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00238

Details:

PFam ID : PF00238

PFam Domain Description : Ribosomal protein L14p/L23e

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 867

Average sequence length: 119.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00238	Q6UVR4_PSEAK_1_129	76.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00238	E9NZX3_BIGNA_1_124	100

Sequence based PCA Plot of the family - PF00238 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay