3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13902

Details:

PFam ID : PF13902

PFam Domain Description : R3H-associated N-terminal domain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 81

Average sequence length: 135.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13902	A9UVS1_MONBE_169_315	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13902	F2UQG1_9EUKA_147_261	100

Sequence based PCA Plot of the family - PF13902 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay