3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08584

Details:

PFam ID : PF08584

PFam Domain Description : Ribonuclease P 40kDa (Rpp40) subunit

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 100

Average sequence length: 221.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08584	D8U6T3_VOLCA_52_367	70.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08584	Q6C7H2_YARLI_59_340	100

Sequence based PCA Plot of the family - PF08584 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay