3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03874

Details:

PFam ID : PF03874

PFam Domain Description : RNA polymerase Rpb4

Number of Sequence in 50% Dataset : 120

Number of Sequence in Full Dataset : 347

Average sequence length: 114.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03874	E6RBV5_CRYGW_78_146	26.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03874	Q5YEV3_BIGNA_5_171	99.4

Sequence based PCA Plot of the family - PF03874 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=110 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay