3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05162

Details:

PFam ID : PF05162

PFam Domain Description : Ribosomal protein L41

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 14

Average sequence length: 22.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05162	B6YW47_THEON_14_35	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05162	B6YW47_THEON_14_35	92.3

Sequence based PCA Plot of the family - PF05162 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay