3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12601

Details:

PFam ID : PF12601

PFam Domain Description : Rubivirus non-structural protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 18.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12601	A9RPL8_PHYPA_263_486	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12601	Q108F1_RUBV_277_313	100

Sequence based PCA Plot of the family - PF12601 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay