3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09420

Details:

PFam ID : PF09420

PFam Domain Description : Ribosome biogenesis protein Nop16

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 183

Average sequence length: 154.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09420	E9CI23_9EUKA_3_186	71.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09420	Q4QHC8_LEIMA_8_161	100

Sequence based PCA Plot of the family - PF09420 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=51 Length=8
Motif3 Start=152 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay