3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11989

Details:

PFam ID : PF11989

PFam Domain Description : Retrograde transport protein Dsl1 C terminal

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 29

Average sequence length: 277.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11989	E7R5H4_PICAD_378_686	35.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11989	C5DK93_LACTC_426_740	100

Sequence based PCA Plot of the family - PF11989 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay