3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03294

Details:

PFam ID : PF03294

PFam Domain Description : RNA polymerase-associated transcription specificity factor, Rap94

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 17

Average sequence length: 668.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03294	Q070E7_CPRV_1_800	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03294	Q9EMZ5_AMEPV_1_816	100

Sequence based PCA Plot of the family - PF03294 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=193 Length=8
Motif4 Start=715 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay