3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00900

Details:

PFam ID : PF00900

PFam Domain Description : Ribosomal family S4e

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 242

Average sequence length: 75.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00900	Q56GW5_HYDEC_2_40	27.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00900	RS4E_METKA_98_187	100

Sequence based PCA Plot of the family - PF00900 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=14 Length=8
Motif2 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay