3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12120

Details:

PFam ID : PF12120

PFam Domain Description : Rifampin ADP-ribosyl transferase

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 62

Average sequence length: 95.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12120	A6FEF9_9GAMM_1_218	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12120	Q2BCY7_9BACI_12_110	100

Sequence based PCA Plot of the family - PF12120 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=8
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay