3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04901

Details:

PFam ID : PF04901

PFam Domain Description : Receptor activity modifying family

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 48

Average sequence length: 98.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04901	Q4SK69_TETNG_31_136	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04901	C3ZX30_BRAFL_134_249	100

Sequence based PCA Plot of the family - PF04901 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=74 Length=8
Motif3 Start=49 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay