3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07809

Details:

PFam ID : PF07809

PFam Domain Description : RTP801 C-terminal region

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 29

Average sequence length: 104.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07809	B4QPS3_DROSI_137_217	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07809	B5DG22_SALSA_66_184	100

Sequence based PCA Plot of the family - PF07809 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay